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=== 分岐図 ===
以下は、主に分子データに基づき構築された、緑藻類に焦点を当てたコンセンサス系統樹である<ref name="Leliaert20122">{{cite journal|last1=Leliaert|first1=Frederik|last2=Smith|first2=David R.|last3=Moreau|first3=Hervé|last4=Herron|first4=Matthew D.|last5=Verbruggen|first5=Heroen|last6=Delwiche|first6=Charles F.|last7=De Clerck|first7=Olivier|year=2012|title=Phylogeny and Molecular Evolution of the Green Algae|url=http://images.algaebase.org/pdf/5628E58F0ecc431F0CsJm2B04CAD/49951.pdf|format=PDF|journal=Critical Reviews in Plant Sciences|volume=31|pages=1–46|doi=10.1080/07352689.2011.615705}}</ref><ref name="Marin20122">{{cite journal|last1=Marin|first1=Birger|year=2012|title=Nested in the Chlorellales or Independent Class? Phylogeny and Classification of the Pedinophyceae (Viridiplantae) Revealed by Molecular Phylogenetic Analyses of Complete Nuclear and Plastid-encoded rRNA Operons|journal=Protist|volume=163|issue=5|pages=778–805|doi=10.1016/j.protis.2011.11.004|pmid=22192529}}</ref><ref name="Laurin-LemayBrinkmann20122">{{cite journal|last1=Laurin-Lemay|first1=Simon|last2=Brinkmann|first2=Henner|last3=Philippe|first3=Hervé|year=2012|title=Origin of land plants revisited in the light of sequence contamination and missing data|journal=Current Biology|volume=22|issue=15|pages=R593–R594|doi=10.1016/j.cub.2012.06.013|pmid=22877776}}</ref><ref>{{Cite journal|last=Leliaert|first=Frederik|last2=Tronholm|first2=Ana|last3=Lemieux|first3=Claude|last4=Turmel|first4=Monique|last5=DePriest|first5=Michael S.|last6=Bhattacharya|first6=Debashish|last7=Karol|first7=Kenneth G.|last8=Fredericq|first8=Suzanne|last9=Zechman|first9=Frederick W.|date=2016-05-09|title=Chloroplast phylogenomic analyses reveal the deepest-branching lineage of the Chlorophyta, Palmophyllophyceae class. nov|url=http://www.nature.com/articles/srep25367|journal=Scientific Reports|language=en|volume=6|pages=25367|doi=10.1038/srep25367|issn=2045-2322|pmc=4860620|pmid=27157793|bibcode=2016NatSR...625367L}}</ref><ref name=":0">{{Cite book|url=https://link.springer.com/referenceworkentry/10.1007/978-3-319-28149-0_36|title=Handbook of the Protists|last=Cook|first=Martha E.|last2=Graham|first2=Linda E.|date=2017|publisher=Springer International Publishing|isbn=9783319281476|editor-last=Archibald|editor-first=John M.|pages=185–204|language=en|doi=10.1007/978-3-319-28149-0_36|editor-last2=Simpson|editor-first2=Alastair G. B.|editor-last3=Slamovits|editor-first3=Claudio H.}}</ref><ref name=":1">{{cite journal|last=Lewis|first=Louise A.|author2=Richard M. McCourt|year=2004|title=Green algae and the origin of land plants|url=http://www.amjbot.org/cgi/content/abstract/91/10/1535|format=abstract|journal=American Journal of Botany|volume=91|issue=10|pages=1535–1556|doi=10.3732/ajb.91.10.1535|pmid=21652308}}</ref><ref name=":2">{{Cite journal|last=Ruhfel|first=Brad R.|last2=Gitzendanner|first2=Matthew A.|last3=Soltis|first3=Pamela S.|last4=Soltis|first4=Douglas E.|last5=Burleigh|first5=J. Gordon|date=2014-02-17|title=From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes|url=https://doi.org/10.1186/1471-2148-14-23|journal=BMC Evolutionary Biology|volume=14|pages=23|doi=10.1186/1471-2148-14-23|pmid=24533922|pmc=3933183|issn=1471-2148}}</ref><ref>{{Cite journal|last=Adl|first=Sina M.|last2=Simpson|first2=Alastair G. B.|last3=Lane|first3=Christopher E.|last4=Lukeš|first4=Julius|last5=Bass|first5=David|last6=Bowser|first6=Samuel S.|last7=Brown|first7=Matthew W.|last8=Burki|first8=Fabien|last9=Dunthorn|first9=Micah|date=2012-09-01|title=The Revised Classification of Eukaryotes|url=http://onlinelibrary.wiley.com/doi/10.1111/j.1550-7408.2012.00644.x/abstract|journal=Journal of Eukaryotic Microbiology|language=en|volume=59|issue=5|pages=429–514|doi=10.1111/j.1550-7408.2012.00644.x|issn=1550-7408|pmid=23020233|pmc=3483872}}</ref><ref>{{Cite journal|last=Lemieux|first=Claude|last2=Otis|first2=Christian|last3=Turmel|first3=Monique|date=2007-01-12|title=A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies|url=https://doi.org/10.1186/1741-7007-5-2|journal=BMC Biology|volume=5|pages=2|doi=10.1186/1741-7007-5-2|pmid=17222354|pmc=1781420|issn=1741-7007}}</ref><ref>{{Cite journal|last=Umen|first=James G.|date=2014-11-01|title=Green Algae and the Origins of Multicellularity in the Plant Kingdom|url=http://cshperspectives.cshlp.org/content/6/11/a016170|journal=Cold Spring Harbor Perspectives in Biology|language=en|volume=6|issue=11|pages=a016170|doi=10.1101/cshperspect.a016170|issn=1943-0264|pmid=25324214|pmc=4413236}}</ref>。アーケプラスチダの中で最初に分岐するのは[[灰色植物門]]とされることが多いが<ref>{{Cite journal|last=Vries|first=Jan de|last2=Gould|first2=Sven B.|date=2017-01-01|title=The monoplastidic bottleneck in algae and plant evolution|url=http://jcs.biologists.org/content/early/2017/09/19/jcs.203414|journal=J Cell Sci|language=en|pages=jcs.203414|doi=10.1242/jcs.203414|issn=0021-9533|pmid=28893840}}</ref><ref name="Ponce-Toledo 2017 386–391">{{Cite journal|last=Ponce-Toledo|first=Rafael I.|last2=Deschamps|first2=Philippe|last3=López-García|first3=Purificación|last4=Zivanovic|first4=Yvan|last5=Benzerara|first5=Karim|last6=Moreira|first6=David|year=2017|title=An Early-Branching Freshwater Cyanobacterium at the Origin of Plastids|url=http://linkinghub.elsevier.com/retrieve/pii/S0960982216314427|journal=Current Biology|volume=27|issue=3|pages=386–391|doi=10.1016/j.cub.2016.11.056|pmc=5650054|pmid=28132810}}</ref><ref>{{Cite journal|last=Dittami|first=Simon M.|last2=Heesch|first2=Svenja|last3=Olsen|first3=Jeanine L.|last4=Collén|first4=Jonas|date=2017-08-01|title=Transitions between marine and freshwater environments provide new clues about the origins of multicellular plants and algae|url=http://onlinelibrary.wiley.com/doi/10.1111/jpy.12547/abstract|journal=Journal of Phycology|language=en|volume=53|issue=4|pages=731–745|doi=10.1111/jpy.12547|issn=1529-8817|pmid=28509401}}</ref><ref>{{Cite book|url=http://linkinghub.elsevier.com/retrieve/pii/S0065229617300721|title=Lost in the Light: Plastid Genome Evolution in Nonphotosynthetic Algae|last=Smith|first=David R.|doi=10.1016/bs.abr.2017.10.001}}</ref><ref name="Ponce-Toledo 2017 386–391" />、いくつかのゲノム研究では、[[紅藻植物門]]が[[クリプチスタ]]と[[ピコゾア門|ピコゾア類]]と共に基部で分岐することが示唆されている<ref>{{Cite journal|last=Burki|first=Fabien|last2=Kaplan|first2=Maia|last3=Tikhonenkov|first3=Denis V.|last4=Zlatogursky|first4=Vasily|last5=Minh|first5=Bui Quang|last6=Radaykina|first6=Liudmila V.|last7=Smirnov|first7=Alexey|last8=Mylnikov|first8=Alexander P.|last9=Keeling|first9=Patrick J.|date=2016-01-27|title=Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista|url=http://rspb.royalsocietypublishing.org/content/283/1823/20152802|journal=Proc. R. Soc. B|language=en|volume=283|issue=1823|pages=20152802|doi=10.1098/rspb.2015.2802|issn=0962-8452|pmc=4795036|pmid=26817772}}</ref><ref>{{Cite journal|last=Brown|first=Matthew W.|last2=Heiss|first2=Aaron|last3=Kamikawa|first3=Ryoma|last4=Inagaki|first4=Yuji|last5=Yabuki|first5=Akinori|last6=Tice|first6=Alexander K.|last7=Shiratori|first7=Takashi|last8=Ishida|first8=Ken|last9=Hashimoto|first9=Tetsuo|date=2017-12-03|title=Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group|url=https://www.biorxiv.org/content/early/2017/12/03/227884|journal=BioRxiv|language=en|pages=227884|doi=10.1101/227884}}</ref><ref>{{Cite journal|last=Lee|first=JunMo|last2=Cho|first2=Chung Hyun|last3=Park|first3=Seung In|last4=Choi|first4=Ji Won|last5=Song|first5=Hyun Suk|last6=West|first6=John A.|last7=Bhattacharya|first7=Debashish|last8=Yoon|first8=Hwan Su|date=2016-09-02|title=Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants|url=https://doi.org/10.1186/s12915-016-0299-5|journal=BMC Biology|volume=14|pages=75|doi=10.1186/s12915-016-0299-5|issn=1741-7007|pmc=5010701|pmid=27589960}}</ref><ref>{{Cite journal|last=Bodył|first=Andrzej|date=2017-05-23|title=Did some red alga-derived plastids evolve via kleptoplastidy? A hypothesis|url=https://doi.org/10.1111/brv.12340|journal=Biological Reviews|language=en|volume=93|issue=1|pages=201–222|doi=10.1111/brv.12340|issn=1464-7931|via=}}</ref><ref>{{Cite journal|last=Gitzendanner|first=Matthew A.|last2=Soltis|first2=Pamela S.|last3=Wong|first3=Gane K.-S.|last4=Ruhfel|first4=Brad R.|last5=Soltis|first5=Douglas E.|date=2018|title=Plastid phylogenomic analysis of green plants: A billion years of evolutionary history|url=https://doi.org/10.1002/ajb2.1048|journal=American Journal of Botany|language=en|volume=105|issue=3|pages=291–301|doi=10.1002/ajb2.1048|issn=0002-9122|via=}}</ref><ref>{{Cite journal|last=Strassert|first=Jürgen F. H.|last2=Jamy|first2=Mahwash|last3=Mylnikov|first3=Alexander P.|last4=Tikhonenkov|first4=Denis V.|last5=Burki|first5=Fabien|date=2018-08-30|title=New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life|url=https://www.biorxiv.org/content/early/2018/08/30/403329|journal=bioRxiv|language=en|pages=403329|doi=10.1101/403329}}</ref>。
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